This is the complete list of members for BamTools::BamAlignment, including all inherited members.
| AddTag(const std::string &tag, const std::string &type, const T &value) | BamTools::BamAlignment | |
| AddTag(const std::string &tag, const std::vector< T > &values) | BamTools::BamAlignment | |
| AlignedBases | BamTools::BamAlignment | |
| AlignmentFlag | BamTools::BamAlignment | |
| BamAlignment() | BamTools::BamAlignment | |
| Bin | BamTools::BamAlignment | |
| BuildCharData() | BamTools::BamAlignment | |
| CigarData | BamTools::BamAlignment | |
| EditTag(const std::string &tag, const std::string &type, const T &value) | BamTools::BamAlignment | |
| EditTag(const std::string &tag, const std::vector< T > &values) | BamTools::BamAlignment | |
| Filename | BamTools::BamAlignment | |
| GetArrayTagType(const std::string &tag, char &type) const | BamTools::BamAlignment | |
| GetEndPosition(bool usePadded=false, bool closedInterval=false) const | BamTools::BamAlignment | |
| GetErrorString() const | BamTools::BamAlignment | |
| GetSoftClips(std::vector< int > &clipSizes, std::vector< int > &readPositions, std::vector< int > &genomePositions, bool usePadded=false) const | BamTools::BamAlignment | |
| GetTag(const std::string &tag, T &destination) const | BamTools::BamAlignment | |
| GetTag(const std::string &tag, std::vector< T > &destination) const | BamTools::BamAlignment | |
| GetTagNames() const | BamTools::BamAlignment | |
| GetTagType(const std::string &tag, char &type) const | BamTools::BamAlignment | |
| HasTag(const std::string &tag) const | BamTools::BamAlignment | |
| InsertSize | BamTools::BamAlignment | |
| Internal::BamReaderPrivate class | BamTools::BamAlignment | friend |
| Internal::BamWriterPrivate class | BamTools::BamAlignment | friend |
| IsDuplicate() const | BamTools::BamAlignment | |
| IsFailedQC() const | BamTools::BamAlignment | |
| IsFirstMate() const | BamTools::BamAlignment | |
| IsMapped() const | BamTools::BamAlignment | |
| IsMateMapped() const | BamTools::BamAlignment | |
| IsMateReverseStrand() const | BamTools::BamAlignment | |
| IsPaired() const | BamTools::BamAlignment | |
| IsPrimaryAlignment() const | BamTools::BamAlignment | |
| IsProperPair() const | BamTools::BamAlignment | |
| IsReverseStrand() const | BamTools::BamAlignment | |
| IsSecondMate() const | BamTools::BamAlignment | |
| IsSupplementary() const | BamTools::BamAlignment | |
| Length | BamTools::BamAlignment | |
| MapQuality | BamTools::BamAlignment | |
| MatePosition | BamTools::BamAlignment | |
| MateRefID | BamTools::BamAlignment | |
| Name | BamTools::BamAlignment | |
| Position | BamTools::BamAlignment | |
| Qualities | BamTools::BamAlignment | |
| QueryBases | BamTools::BamAlignment | |
| RefID | BamTools::BamAlignment | |
| RemoveTag(const std::string &tag) | BamTools::BamAlignment | |
| SetIsDuplicate(bool ok) | BamTools::BamAlignment | |
| SetIsFailedQC(bool ok) | BamTools::BamAlignment | |
| SetIsFirstMate(bool ok) | BamTools::BamAlignment | |
| SetIsMapped(bool ok) | BamTools::BamAlignment | |
| SetIsMateMapped(bool ok) | BamTools::BamAlignment | |
| SetIsMateReverseStrand(bool ok) | BamTools::BamAlignment | |
| SetIsPaired(bool ok) | BamTools::BamAlignment | |
| SetIsPrimaryAlignment(bool ok) | BamTools::BamAlignment | |
| SetIsProperPair(bool ok) | BamTools::BamAlignment | |
| SetIsReverseStrand(bool ok) | BamTools::BamAlignment | |
| SetIsSecondMate(bool ok) | BamTools::BamAlignment | |
| TagData | BamTools::BamAlignment | |
