Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 12]

▼CAlignmentSortBase
CBamTools::Algorithms::Sort::ByName	Function object for comparing alignments by name
CBamTools::Algorithms::Sort::ByPosition	Function object for comparing alignments by position
CBamTools::Algorithms::Sort::ByTag< T >	Function object for comparing alignments by tag value
CBamTools::Algorithms::Sort::Unsorted	Placeholder function object
CBamTools::BamAlignment	The main BAM alignment data structure
CBamTools::BamIndex	Provides methods for generating & loading BAM index files
CBamTools::BamMultiReader	Convenience class for reading multiple BAM files
CBamTools::BamReader	Provides read access to BAM files
CBamTools::BamRegion	Represents a sequential genomic region
CBamTools::BamWriter	Provides write access for generating BAM files
CBamTools::CigarOp	Represents a CIGAR alignment operation
CBamTools::CustomHeaderTag
CBamTools::IBamIODevice
CBamTools::RefData	Represents a reference sequence entry
CBamTools::SamHeader	Represents the SAM-formatted text header that is part of the BAM file header
CBamTools::SamProgram	Represents a SAM program record
CBamTools::SamProgramChain	Sorted container "chain" of SamProgram records
CBamTools::SamReadGroup	Represents a SAM read group entry
CBamTools::SamReadGroupDictionary	Container of SamReadGroup entries
CBamTools::SamSequence	Represents a SAM sequence entry
CBamTools::SamSequenceDictionary	Container of SamSequence entries
CBamTools::Algorithms::Sort	Provides classes & methods related to sorting BamAlignments