elastix::CUDAResampler< TElastix > Class Template Reference

#include <elxCUDAResampler.h>

Detailed Description

template<class TElastix>
class elastix::CUDAResampler< TElastix >

A resampler based on the itk::CUDAResampleImageFilter.

Warning

The implementation is currently very limited: only a single third order B-spline transform is supported for 3D images together with third order B-spline interpolation.

The parameters used in this class are:

Parameters:

Resampler: Select this resampler as follows:
(Resampler "CUDAResampler")

Definition at line 43 of file elxCUDAResampler.h.

Inheritance diagram for elastix::CUDAResampler< TElastix >:

Public Types
typedef Superclass2::ConfigurationPointer	ConfigurationPointer
typedef Superclass2::ConfigurationType	ConfigurationType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass2::ElastixPointer	ElastixPointer
typedef Superclass2::ElastixType	ElastixType
typedef Superclass1::IndexType	IndexType
typedef Superclass1::InputImagePointer	InputImagePointer
typedef Superclass1::InputImageRegionType	InputImageRegionType
typedef Superclass1::InputImageType	InputImageType
typedef Superclass1::InterpolatorPointerType	InterpolatePointerType
typedef Superclass1::InterpolatorType	InterpolatorType
typedef Superclass2::ITKBaseType	ITKBaseType
typedef Superclass1::OriginPointType	OriginPointType
typedef Superclass1::OutputImagePointer	OutputImagePointer
typedef Superclass1::OutputImageRegionType	OutputImageRegionType
typedef Superclass1::OutputImageType	OutputImageType
typedef Superclass1::PixelType	PixelType
typedef itk::SmartPointer< Self >	Pointer
typedef Superclass1::PointType	PointType
typedef Superclass2::RegistrationPointer	RegistrationPointer
typedef Superclass2::RegistrationType	RegistrationType
typedef CUDAResampler	Self
typedef Superclass1::SizeType	SizeType
typedef Superclass1::SpacingType	SpacingType
typedef itk::itkCUDAResampleImageFilter< typename ResamplerBase< TElastix >::InputImageType, typename ResamplerBase< TElastix >::OutputImageType, typename ResamplerBase< TElastix >::CoordRepType >	Superclass1
typedef ResamplerBase< TElastix >	Superclass2
typedef Superclass1::TransformPointerType	TransformPointerType
typedef Superclass1::TransformType	TransformType
typedef Superclass1::ValidTransformPointer	ValidTransformPointer
Public Types inherited from itk::itkCUDAResampleImageFilter< ResamplerBase< TElastix >::InputImageType, ResamplerBase< TElastix >::OutputImageType, ResamplerBase< TElastix >::CoordRepType >
typedef SmartPointer< const Self >	ConstPointer
typedef cuda::CUDAResampleImageFilter< typename InternalBSplineTransformType::ParametersValueType, typename ResamplerBase< TElastix >::InputImageType::PixelType, float >	CudaResampleImageFilterType
typedef Superclass::DirectionType	DirectionType
typedef Superclass::ImageBaseType	ImageBaseType
typedef Superclass::IndexType	IndexType
typedef Superclass::InputImageConstPointer	InputImageConstPointer
typedef Superclass::InputImagePointer	InputImagePointer
typedef Superclass::InputImageRegionType	InputImageRegionType
typedef Superclass::InputImageType	InputImageType
typedef Superclass::InputPixelType	InputPixelType
typedef AdvancedBSplineDeformableTransform< ResamplerBase< TElastix >::CoordRepType, 3, 3 >	InternalAdvancedBSplineTransformType
typedef BSplineDeformableTransform< ResamplerBase< TElastix >::CoordRepType, 3, 3 >	InternalBSplineTransformType
typedef AdvancedCombinationTransform< ResamplerBase< TElastix >::CoordRepType, 3 >	InternalComboTransformType
typedef Superclass::InterpolatorPointerType	InterpolatorPointerType
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::OriginPointType	OriginPointType
typedef Superclass::OutputImagePointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef Superclass::OutputImageType	OutputImageType
typedef Superclass::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef Superclass::PointType	PointType
typedef itkCUDAResampleImageFilter	Self
typedef Superclass::SizeType	SizeType
typedef Superclass::SpacingType	SpacingType
typedef ResampleImageFilter< ResamplerBase< TElastix >::InputImageType, ResamplerBase< TElastix >::OutputImageType, ResamplerBase< TElastix >::CoordRepType >	Superclass
typedef Superclass::TransformPointerType	TransformPointerType
typedef Superclass::TransformType	TransformType
typedef InternalAdvancedBSplineTransformType::ConstPointer	ValidTransformConstPointer
typedef InternalAdvancedBSplineTransformType::Pointer	ValidTransformPointer
Public Types inherited from elastix::ResamplerBase< TElastix >
typedef Superclass::ConfigurationPointer	ConfigurationPointer
typedef Superclass::ConfigurationType	ConfigurationType
typedef ElastixType::CoordRepType	CoordRepType
typedef ITKBaseType::DirectionType	DirectionType
typedef Superclass::ElastixPointer	ElastixPointer
typedef Superclass::ElastixType	ElastixType
typedef ITKBaseType::IndexType	IndexType
typedef ElastixType::MovingImageType	InputImageType
typedef ITKBaseType::InterpolatorType	InterpolatorType
typedef itk::ResampleImageFilter< InputImageType, OutputImageType, CoordRepType >	ITKBaseType
typedef ITKBaseType::OriginPointType	OriginPointType
typedef ElastixType::MovingImageType	OutputImageType
typedef ITKBaseType::PixelType	OutputPixelType
typedef ElastixType::ParameterMapType	ParameterMapType
typedef elx::ProgressCommand	ProgressCommandType
typedef Superclass::RegistrationPointer	RegistrationPointer
typedef Superclass::RegistrationType	RegistrationType
typedef ResamplerBase	Self
typedef ITKBaseType::SizeType	SizeType
typedef ITKBaseType::SpacingType	SpacingType
typedef BaseComponentSE< TElastix >	Superclass
typedef ITKBaseType::TransformType	TransformType
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer	ConfigurationPointer
typedef ElastixType::ConfigurationType	ConfigurationType
typedef ElastixType::Pointer	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
virtual int	BeforeAll (void)
virtual void	BeforeRegistration (void)
	elxClassNameMacro ("CUDAResampler")
virtual const char *	GetClassName () const
virtual void	ReadFromFile (void)
virtual void	WriteToFile (void) const
Public Member Functions inherited from itk::itkCUDAResampleImageFilter< ResamplerBase< TElastix >::InputImageType, ResamplerBase< TElastix >::OutputImageType, ResamplerBase< TElastix >::CoordRepType >
virtual void	GenerateData (void)
virtual bool	GetUseCuda () const
virtual bool	GetUseFastCUDAKernel () const
virtual bool	GetUseGPUToCastData () const
virtual const WarningReportType &	GetWarningReport (void) const
virtual void	SetUseCuda (bool _arg)
virtual void	SetUseFastCUDAKernel (bool _arg)
virtual void	SetUseGPUToCastData (bool _arg)
virtual void	UseCudaOff ()
virtual void	UseCudaOn ()
virtual void	UseFastCUDAKernelOff ()
virtual void	UseFastCUDAKernelOn ()
virtual void	UseGPUToCastDataOff ()
virtual void	UseGPUToCastDataOn ()
Public Member Functions inherited from elastix::ResamplerBase< TElastix >
virtual void	AfterEachIterationBase (void)
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAllTransformix (void)
virtual void	BeforeRegistrationBase (void)
virtual void	CreateItkResultImage (void)
virtual void	CreateTransformParametersMap (ParameterMapType *paramsMap) const
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
	itkStaticConstMacro (ImageDimension, unsigned int, OutputImageType::ImageDimension)
virtual void	ResampleAndWriteResultImage (const char *filename, const bool &showProgress=true)
virtual void	WriteResultImage (OutputImageType *imageimage, const char *filename, const bool &showProgress=true)
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationType *	GetConfiguration (void) const
virtual ElastixType *	GetElastix (void) const
virtual RegistrationPointer	GetRegistration (void) const
virtual void	SetConfiguration (ConfigurationType *_arg)
virtual void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)
virtual void	AfterEachResolution (void)
virtual void	AfterRegistration (void)
virtual int	BeforeAllBase (void)
virtual void	BeforeEachResolution (void)
virtual void	BeforeEachResolutionBase (void)
std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision) const
virtual const char *	elxGetClassName (void) const
virtual const char *	GetComponentLabel (void) const
virtual void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::itkCUDAResampleImageFilter< ResamplerBase< TElastix >::InputImageType, ResamplerBase< TElastix >::OutputImageType, ResamplerBase< TElastix >::CoordRepType >
static Pointer	New ()

Protected Member Functions
virtual void	CheckForValidConfiguration (ValidTransformPointer &bSplineTransform)
	CUDAResampler ()
virtual	~CUDAResampler ()
Protected Member Functions inherited from itk::itkCUDAResampleImageFilter< ResamplerBase< TElastix >::InputImageType, ResamplerBase< TElastix >::OutputImageType, ResamplerBase< TElastix >::CoordRepType >
	itkCUDAResampleImageFilter ()
	~itkCUDAResampleImageFilter ()
Protected Member Functions inherited from elastix::ResamplerBase< TElastix >
	ResamplerBase ()
virtual void	SetComponents (void)
virtual	~ResamplerBase ()
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()
virtual	~BaseComponentSE ()
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()
virtual	~BaseComponent ()

Private Member Functions
	CUDAResampler (const Self &)
void	operator= (const Self &)

Additional Inherited Members
Protected Attributes inherited from elastix::ResamplerBase< TElastix >
bool	m_ShowProgress
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration
ElastixPointer	m_Elastix
RegistrationPointer	m_Registration

Member Typedef Documentation

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::CUDAResampler< TElastix >::ConfigurationPointer

Definition at line 97 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::CUDAResampler< TElastix >::ConfigurationType

Definition at line 96 of file elxCUDAResampler.h.

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::CUDAResampler< TElastix >::ConstPointer

Definition at line 60 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::CUDAResampler< TElastix >::ElastixPointer

Definition at line 95 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass2::ElastixType elastix::CUDAResampler< TElastix >::ElastixType

Typedef's from the ResamplerBase.

Definition at line 94 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::IndexType elastix::CUDAResampler< TElastix >::IndexType

Definition at line 85 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::InputImagePointer elastix::CUDAResampler< TElastix >::InputImagePointer

Definition at line 77 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::InputImageRegionType elastix::CUDAResampler< TElastix >::InputImageRegionType

Definition at line 79 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::InputImageType elastix::CUDAResampler< TElastix >::InputImageType

Typedef's inherited from the superclass.

Definition at line 75 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::InterpolatorPointerType elastix::CUDAResampler< TElastix >::InterpolatePointerType

Definition at line 83 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::InterpolatorType elastix::CUDAResampler< TElastix >::InterpolatorType

Definition at line 82 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::CUDAResampler< TElastix >::ITKBaseType

Definition at line 100 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::OriginPointType elastix::CUDAResampler< TElastix >::OriginPointType

Definition at line 90 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::OutputImagePointer elastix::CUDAResampler< TElastix >::OutputImagePointer

Definition at line 78 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::OutputImageRegionType elastix::CUDAResampler< TElastix >::OutputImageRegionType

Definition at line 88 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::OutputImageType elastix::CUDAResampler< TElastix >::OutputImageType

Definition at line 76 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::PixelType elastix::CUDAResampler< TElastix >::PixelType

Definition at line 87 of file elxCUDAResampler.h.

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::CUDAResampler< TElastix >::Pointer

Definition at line 59 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::PointType elastix::CUDAResampler< TElastix >::PointType

Definition at line 86 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::CUDAResampler< TElastix >::RegistrationPointer

Definition at line 99 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass2::RegistrationType elastix::CUDAResampler< TElastix >::RegistrationType

Definition at line 98 of file elxCUDAResampler.h.

template<class TElastix >

typedef CUDAResampler elastix::CUDAResampler< TElastix >::Self

Standard ITK-stuff.

Definition at line 53 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::SizeType elastix::CUDAResampler< TElastix >::SizeType

Definition at line 84 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::SpacingType elastix::CUDAResampler< TElastix >::SpacingType

Definition at line 89 of file elxCUDAResampler.h.

template<class TElastix >

typedef itk::itkCUDAResampleImageFilter< typename ResamplerBase< TElastix >::InputImageType, typename ResamplerBase< TElastix >::OutputImageType, typename ResamplerBase< TElastix >::CoordRepType > elastix::CUDAResampler< TElastix >::Superclass1

Definition at line 57 of file elxCUDAResampler.h.

template<class TElastix >

typedef ResamplerBase< TElastix > elastix::CUDAResampler< TElastix >::Superclass2

Definition at line 58 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::TransformPointerType elastix::CUDAResampler< TElastix >::TransformPointerType

Definition at line 81 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::TransformType elastix::CUDAResampler< TElastix >::TransformType

Definition at line 80 of file elxCUDAResampler.h.

template<class TElastix >

typedef Superclass1::ValidTransformPointer elastix::CUDAResampler< TElastix >::ValidTransformPointer

Definition at line 91 of file elxCUDAResampler.h.

Constructor & Destructor Documentation

template<class TElastix >

elastix::CUDAResampler< TElastix >::CUDAResampler ( )

inlineprotected

The constructor.

Definition at line 116 of file elxCUDAResampler.h.

template<class TElastix >

virtual elastix::CUDAResampler< TElastix >::~CUDAResampler ( )

inlineprotectedvirtual

The destructor.

Definition at line 118 of file elxCUDAResampler.h.

template<class TElastix >

elastix::CUDAResampler< TElastix >::CUDAResampler ( const Self &  )

private

The private constructor.

Member Function Documentation

template<class TElastix >

virtual int elastix::CUDAResampler< TElastix >::BeforeAll ( void  )

virtual

Reimplemented from elastix::BaseComponent.

template<class TElastix >

virtual void elastix::CUDAResampler< TElastix >::BeforeRegistration ( void  )

virtual

Reimplemented from elastix::BaseComponent.

template<class TElastix >

virtual void elastix::CUDAResampler< TElastix >::CheckForValidConfiguration ( ValidTransformPointer &  bSplineTransform )

protectedvirtual

Overwrite from itkCUDAResampleImageFilter. We simply call the Superclass and print the warning messages to elxout.

Reimplemented from itk::itkCUDAResampleImageFilter< ResamplerBase< TElastix >::InputImageType, ResamplerBase< TElastix >::OutputImageType, ResamplerBase< TElastix >::CoordRepType >.

template<class TElastix >

elastix::CUDAResampler< TElastix >::elxClassNameMacro

(

"CUDAResampler< TElastix >"

)

Name of this class. Use this name in the parameter file to select this specific resampler.
example: (Resampler "CUDAResampler")

template<class TElastix >

virtual const char* elastix::CUDAResampler< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::ResamplerBase< TElastix >.

template<class TElastix >

static Pointer elastix::CUDAResampler< TElastix >::New ( )

static

Method for creation through the object factory.

template<class TElastix >

void elastix::CUDAResampler< TElastix >::operator= ( const Self &  )

private

The private copy constructor.

template<class TElastix >

virtual void elastix::CUDAResampler< TElastix >::ReadFromFile ( void  )

virtual

Function to read parameters from a file.

Reimplemented from elastix::ResamplerBase< TElastix >.

template<class TElastix >

virtual void elastix::CUDAResampler< TElastix >::WriteToFile ( void  ) const

virtual

Function to write parameters to a file.

Reimplemented from elastix::ResamplerBase< TElastix >.